Javascript Question

[PixelColada]

I have Coppermine 1.49 bridged into a CMS installation.  At my homepage, there is a script which generates custom fonts for the menu.

When I click on gallery coppermine affect the function of this script.  I'm more familiar with html than with php.

Question:  If I were to execute a script in html, it would go in the head.  Where would I put this:

<script>
whatever
</script>

so that it would execute properly?  What file and where should it go?

Thanks.

[Nibbler]

template.html